Here's my opinion. Take if for what it's worth, which may not be much.
I don't use a controller on mine. I have a ph monitor, just so I have a general idea of ph inside the reactor.
I let the reactor run 24/7. I use a custom build high end dual stage regulator and an old Cole-Parmer peristaltic pump purchased off eBay.
IMHO, using a controller adds unnecessary complication. If setup correctly and you test alk often like you are supposed to, you shouldn't need a controller. If anything, use the controller as a failsafe, like if you see a drastic drop in tank ph you can have it shut down the reactor and send you an alarm so you know something is up.
Start off with a reactor ph around 6.7 by setting your effluent rate to around 80-90 ml/min and whatever bubble count is needed to achieve that ph.
This will give you a pretty good starting point from which you can make adjustments.
In the beginning test alk twice per day, morning and evening.
The best way to make adjustments is to NOT use the reactor to raise your Alk. You'll fight with it that much longer. Use baking soda or two-part to get it up to where it needs to be, and then try to get the reactor to HOLD it there by lowering the reactor ph by increasing your c02 a tiny bit.
If it drops too much, again... add baking soda or two-part to get it back to where you need it. It's a bit of a pain in the beginning but you'll slowly see it start to even out.
If alk gets a little too high, lower the bubble count a bit and see if it drops. You want to make very minor adjustments. If it starts to get much too high, pull the power to the solenoid for 12 hours and test again.
When you get to your target Alk within a few ppm you can start testing once a day.